The Origins of Genome Architecture

Author: Michael Lynch

Publisher: Sinauer Associates Incorporated


Category: Medical

Page: 494

View: 3839

The availability of genomic blueprints for hundreds of species has led to a transformation in biology, encouraging the proliferation of adaptive arguments for the evolution of genomic features, yet often sacrificing simpler, more compelling explanations. This textbook explains why the details matter and presents an explanatory framework for how the architectural diversity of eukarotic genomes and genes came to arise. Presented in non-technical fashion, it is compatible for use in an advanced Genetics course and as a professional reference.

Evolution and Selection of Quantitative Traits

Author: Bruce Walsh,Michael Lynch

Publisher: Oxford University Press

ISBN: 0192566644

Category: Science

Page: 1504

View: 9449

Quantitative traits-be they morphological or physiological characters, aspects of behavior, or genome-level features such as the amount of RNA or protein expression for a specific gene-usually show considerable variation within and among populations. Quantitative genetics, also referred to as the genetics of complex traits, is the study of such characters and is based on mathematical models of evolution in which many genes influence the trait and in which non-genetic factors may also be important. Evolution and Selection of Quantitative Traits presents a holistic treatment of the subject, showing the interplay between theory and data with extensive discussions on statistical issues relating to the estimation of the biologically relevant parameters for these models. Quantitative genetics is viewed as the bridge between complex mathematical models of trait evolution and real-world data, and the authors have clearly framed their treatment as such. This is the second volume in a planned trilogy that summarizes the modern field of quantitative genetics, informed by empirical observations from wide-ranging fields (agriculture, evolution, ecology, and human biology) as well as population genetics, statistical theory, mathematical modeling, genetics, and genomics. Whilst volume 1 (1998) dealt with the genetics of such traits, the main focus of volume 2 is on their evolution, with a special emphasis on detecting selection (ranging from the use of genomic and historical data through to ecological field data) and examining its consequences.

Adam and the Genome

Reading Scripture after Genetic Science

Author: Scot McKnight,Dennis R. Venema

Publisher: Brazos Press

ISBN: 1493406744

Category: Religion

Page: 240

View: 2106

Genomic science indicates that humans descend not from an individual pair but from a large population. What does this mean for the basic claim of many Christians: that humans descend from Adam and Eve? Leading evangelical geneticist Dennis Venema and popular New Testament scholar Scot McKnight combine their expertise to offer informed guidance and answers to questions pertaining to evolution, genomic science, and the historical Adam. Some of the questions they explore include: - Is there credible evidence for evolution? - Do we descend from a population or are we the offspring of Adam and Eve? - Does taking the Bible seriously mean rejecting recent genomic science? - How do Genesis's creation stories reflect their ancient Near Eastern context, and how did Judaism understand the Adam and Eve of Genesis? - Doesn't Paul's use of Adam in the New Testament prove that Adam was a historical individual? The authors address up-to-date genomics data with expert commentary from both genetic and theological perspectives, showing that genome research and Scripture are not irreconcilable. Foreword by Tremper Longman III and afterword by Daniel Harrell.

The Origins of Genome Architecture

Author: Michael Lynch

Publisher: Sinauer Associates Incorporated


Category: Medical

Page: 494

View: 4700

The availability of genomic blueprints for hundreds of species has led to a transformation in biology, encouraging the proliferation of adaptive arguments for the evolution of genomic features, yet often sacrificing simpler, more compelling explanations. This textbook explains why the details matter and presents an explanatory framework for how the architectural diversity of eukarotic genomes and genes came to arise. Presented in non-technical fashion, it is compatible for use in an advanced Genetics course and as a professional reference.

Investigating the Human Genome

Insights into Human Variation and Disease Susceptibility

Author: Moyra Smith

Publisher: FT Press

ISBN: 9780132172844

Category: Medical

Page: 256

View: 7550

Leading medical genetics scholar Moyra Smith reviews current and recent work in genetics and genomics to assess progress in understanding human variation and the pathogenesis of common and rare diseases in which genetics plays a role. Smith provides an exceptional overview of the most important biomedical progress arising from the greatly increased genetic information base generated by gene mapping and the sequencing of the complete Human Genome. This book addresses into a wide spectrum of topics associated with human genetics and genomics, including: Human origins; migrations and human population diversity gained though genomic analyses. The complexities of psychiatric diseases that are influenced by genetics. The pathogenesis of late-onset neurological diseases such as Alzheimer’s, Parkinsonism, and ALS. Key aspects of protein misfolding. Gene-environment interactions in DNA damage and repair and DNA instability. Micro RNAs and mRNA translation. Epigenetics. New functions for old enzymes in cancer.

The Logic of Chance

The Nature and Origin of Biological Evolution

Author: Eugene V. Koonin

Publisher: FT Press

ISBN: 9780132623179

Category: Science

Page: 528

View: 5204

The Logic of Chance offers a reappraisal and a new synthesis of theories, concepts, and hypotheses on the key aspects of the evolution of life on earth in light of comparative genomics and systems biology. The author presents many specific examples from systems and comparative genomic analysis to begin to build a new, much more detailed, complex, and realistic picture of evolution. The book examines a broad range of topics in evolutionary biology including the inadequacy of natural selection and adaptation as the only or even the main mode of evolution; the key role of horizontal gene transfer in evolution and the consequent overhaul of the Tree of Life concept; the central, underappreciated evolutionary importance of viruses; the origin of eukaryotes as a result of endosymbiosis; the concomitant origin of cells and viruses on the primordial earth; universal dependences between genomic and molecular-phenomic variables; and the evolving landscape of constraints that shape the evolution of genomes and molecular phenomes. "Koonin's account of viral and pre-eukaryotic evolution is undoubtedly up-to-date. His "mega views" of evolution (given what was said above) and his cosmological musings, on the other hand, are interesting reading." Summing Up: Recommended Reprinted with permission from CHOICE, copyright by the American Library Association.

Relics of Eden

The Powerful Evidence of Evolution in Human DNA

Author: Daniel J. Fairbanks

Publisher: Prometheus Books

ISBN: 1615920099

Category: Science

Page: 281

View: 1939

Since the publication in 1859 of Darwin’s Origin of Species, debate over the theory of evolution has been continuous and often impassioned. In recent years, opponents of "Darwin’s dangerous idea" have mounted history’s most sophisticated and generously funded attack, claiming that evolution is "a theory in crisis." Ironically, these claims are being made at a time when the explosion of information from genome projects has revealed the most compelling and overwhelming evidence of evolution ever discovered. Much of the latest evidence of human evolution comes not from our genes, but from so-called "junk DNA," leftover relics of our evolutionary history that make up the vast majority of our DNA. Relics of Eden explores this powerful DNA-based evidence of human evolution. The "relics" are the millions of functionally useless but scientifically informative remnants of our evolutionary ancestry trapped in the DNA of every person on the planet. For example, the analysis of the chimpanzee and Rhesus monkey genomes shows indisputable evidence of the human evolutionary relationship with other primates. Over 95 percent of our genome is identical with that of chimpanzees and we also have a good deal in common with other animal species. Author Daniel J. Fairbanks also discusses what DNA analysis reveals about where humans originated. The diversity of DNA sequences repeatedly confirms the archeological evidence that humans originated in sub-Saharan Africa (the "Eden" of the title) and from there migrated through the Middle East and Asia to Europe, Australia, and the Americas. In conclusion, Fairbanks confronts the supposed dichotomy between evolution and religion, arguing that both science and religion are complementary ways to seek truth. He appeals to the vast majority of Americans who hold religious convictions not to be fooled by the pseudoscience of Creationists and Intelligent Design advocates and to abandon the false dichotomy between religion and real science. This concise, very readable presentation of recent genetic research is completely accessible to the nonspecialist and makes for enlightening and fascinating reading.

The Origins of Genome Architecture

Author: Michael Lynch

Publisher: Sinauer Associates Incorporated


Category: Medical

Page: 494

View: 6163

The availability of genomic blueprints for hundreds of species has led to a transformation in biology, encouraging the proliferation of adaptive arguments for the evolution of genomic features, yet often sacrificing simpler, more compelling explanations. This textbook explains why the details matter and presents an explanatory framework for how the architectural diversity of eukarotic genomes and genes came to arise. Presented in non-technical fashion, it is compatible for use in an advanced Genetics course and as a professional reference.

Brain Evolution by Design

From Neural Origin to Cognitive Architecture

Author: Shuichi Shigeno,Yasunori Murakami,Tadashi Nomura

Publisher: Springer

ISBN: 4431564691

Category: Science

Page: 438

View: 9480

This book presents a new, detailed examination that explains how elegant brains have been shaped in evolution. It consists of 19 chapters written by academic professionals in neuroscience, opening with the origin of single-celled creatures and then introducing primordial types in invertebrates with the great abundance of the brains of vertebrates. Important topics are provided in a timely manner, because novel techniques emerged rapidly—as seen, for examples, in the next-generation sequencers and omics approaches. With the explosion of big data, neural-related genes and molecules is now on the radar. In fact, Europe’s big science and technology projects, a €1 billion plan called the Human Brain Project and the Blue Brain Project to understand mammalian brain networks, have been launched in recent years. Furthermore, with the rise of recently advanced artificial intelligence, there is great enthusiasm for understanding the evolution of neural networks. The views from brain evolution in nature provide an essential opportunity to generate ideas for novel neuron- and brain-inspired computation. The ambition behind this book is that it will stimulate young scientists who seek a deeper understanding in order to find the basic principles shaping brains that provided higher cognitive functions in the course of evolution.

The Origins of Order

Self-Organization and Selection in Evolution

Author: Stuart A. Kauffman

Publisher: Oxford University Press

ISBN: 0199826676

Category: Science

Page: 734

View: 774

Stuart Kauffman here presents a brilliant new paradigm for evolutionary biology, one that extends the basic concepts of Darwinian evolution to accommodate recent findings and perspectives from the fields of biology, physics, chemistry and mathematics. The book drives to the heart of the exciting debate on the origins of life and maintenance of order in complex biological systems. It focuses on the concept of self-organization: the spontaneous emergence of order that is widely observed throughout nature Kauffman argues that self-organization plays an important role in the Darwinian process of natural selection. Yet until now no systematic effort has been made to incorporate the concept of self-organization into evolutionary theory. The construction requirements which permit complex systems to adapt are poorly understood, as is the extent to which selection itself can yield systems able to adapt more successfully. This book explores these themes. It shows how complex systems, contrary to expectations, can spontaneously exhibit stunning degrees of order, and how this order, in turn, is essential for understanding the emergence and development of life on Earth. Topics include the new biotechnology of applied molecular evolution, with its important implications for developing new drugs and vaccines; the balance between order and chaos observed in many naturally occurring systems; new insights concerning the predictive power of statistical mechanics in biology; and other major issues. Indeed, the approaches investigated here may prove to be the new center around which biological science itself will evolve. The work is written for all those interested in the cutting edge of research in the life sciences.

Conceptual Breakthroughs in Evolutionary Genetics

A Brief History of Shifting Paradigms

Author: John C. Avise

Publisher: Academic Press

ISBN: 0124202373

Category: Science

Page: 184

View: 5641

Conceptual Breakthroughs in Evolutionary Genetics is a pithy, lively book occupying a special niche—the conceptual history of evolutionary genetics— not inhabited by any other available treatment. Written by a world-leading authority in evolutionary genetics, this work encapsulates and ranks 70 of the most significant paradigm shifts in evolutionary biology and genetics during the century-and-a-half since Darwin and Mendel. The science of evolutionary genetics is central to all of biology, but many students and other practitioners have little knowledge of its historical roots and conceptual developments. This book fills that knowledge gap in a thought-provoking and readable format. This fascinating chronological journey along the many conceptual pathways to our modern understanding of evolutionary and genetic principles is a wonderful springboard for discussions in undergraduate or graduate seminars in evolutionary biology and genetics. But more than that, anyone interested in the history and philosophy of science will find much of value between its covers. Provides a relative ranking of 70 seminal breakthroughs and paradigm shifts in the field of evolutionary biology and genetics Modular format permits ready access to each described subject Historical overview of a field whose concepts are central to all of biology and relevant to a broad audience of biologists, science historians, and philosophers of science Extensively cross-referenced with a guide to landmark papers and books for each topic

Ordinary Geniuses

How Two Mavericks Shaped Modern Science

Author: Gino Segre

Publisher: Penguin

ISBN: 0143121308

Category: Biography & Autobiography

Page: 328

View: 7857

Originally published: New York: Viking, 2011.

Who Wrote the Book of Life?

A History of the Genetic Code

Author: Lily E. Kay

Publisher: Stanford University Press

ISBN: 9780804734172

Category: Science

Page: 441

View: 6287

This is a detailed history of one of the most important and dramatic episodes in modern science, recounted from the novel vantage point of the dawn of the information age and its impact on representations of nature, heredity, and society. Drawing on archives, published sources, and interviews, the author situates work on the genetic code (1953-70) within the history of life science, the rise of communication technosciences (cybernetics, information theory, and computers), the intersection of molecular biology with cryptanalysis and linguistics, and the social history of postwar Europe and the United States. Kay draws out the historical specificity in the process by which the central biological problem of DNA-based protein synthesis came to be metaphorically represented as an information code and a writing technology—and consequently as a “book of life.” This molecular writing and reading is part of the cultural production of the Nuclear Age, its power amplified by the centuries-old theistic resonance of the “book of life” metaphor. Yet, as the author points out, these are just metaphors: analogies, not ontologies. Necessary and productive as they have been, they have their epistemological limitations. Deploying analyses of language, cryptology, and information theory, the author persuasively argues that, technically speaking, the genetic code is not a code, DNA is not a language, and the genome is not an information system (objections voiced by experts as early as the 1950s). Thus her historical reconstruction and analyses also serve as a critique of the new genomic biopower. Genomic textuality has become a fact of life, a metaphor literalized, she claims, as human genome projects promise new levels of control over life through the meta-level of information: control of the word (the DNA sequences) and its editing and rewriting. But the author shows how the humbling limits of these scriptural metaphors also pose a challenge to the textual and material mastery of the genomic “book of life.”

Origin and Evolution of Viruses

Author: Esteban Domingo,Colin R. Parrish,John J. Holland

Publisher: Elsevier

ISBN: 9780080564968

Category: Science

Page: 560

View: 3250

New viral diseases are emerging continuously. Viruses adapt to new environments at astounding rates. Genetic variability of viruses jeopardizes vaccine efficacy. For many viruses mutants resistant to antiviral agents or host immune responses arise readily, for example, with HIV and influenza. These variations are all of utmost importance for human and animal health as they have prevented us from controlling these epidemic pathogens. This book focuses on the mechanisms that viruses use to evolve, survive and cause disease in their hosts. Covering human, animal, plant and bacterial viruses, it provides both the basic foundations for the evolutionary dynamics of viruses and specific examples of emerging diseases. * NEW - methods to establish relationships among viruses and the mechanisms that affect virus evolution * UNIQUE - combines theoretical concepts in evolution with detailed analyses of the evolution of important virus groups * SPECIFIC - Bacterial, plant, animal and human viruses are compared regarding their interation with their hosts

Comparative and Evolutionary Genomics of Angiosperm Trees

Author: Andrew Groover,Quentin Cronk

Publisher: Springer

ISBN: 3319493299

Category: Science

Page: 366

View: 536

Marking the change in focus of tree genomics from single species to comparative approaches, this book covers biological, genomic, and evolutionary aspects of angiosperm trees that provide information and perspectives to support researchers broadening the focus of their research. The diversity of angiosperm trees in morphology, anatomy, physiology and biochemistry has been described and cataloged by various scientific disciplines, but the molecular, genetic, and evolutionary mechanisms underlying this diversity have only recently been explored. Excitingly, advances in genomic and sequencing technologies are ushering a new era of research broadly termed comparative genomics, which simultaneously exploits and describes the evolutionary origins and genetic regulation of traits of interest. Within tree genomics, this research is already underway, as the number of complete genome sequences available for angiosperm trees is increasing at an impressive pace and the number of species for which RNAseq data are available is rapidly expanding. Because they are extensively covered by other literature and are rapidly changing, technical and computational approaches—such as the latest sequencing technologies—are not a main focus of this book. Instead, this comprehensive volume provides a valuable, broader view of tree genomics whose relevance will outlive the particulars of current-day technical approaches. The first section of the book discusses background on the evolution and diversification of angiosperm trees, as well as offers description of the salient features and diversity of the unique physiology and wood anatomy of angiosperm trees. The second section explores the two most advanced model angiosperm tree species (poplars and eucalypts) as well as species that are soon to emerge as new models. The third section describes the structural features and evolutionary histories of angiosperm tree genomes, followed by a fourth section focusing on the genomics of traits of biological, ecological, and economic interest. In summary, this book is a timely and well-referenced foundational resource for the forest tree community looking to embrace comparative approaches for the study of angiosperm trees.

Darwin's Harvest

New Approaches to the Origins, Evolution, and Conservation of Crops

Author: Timothy J. Motley,Nyree Zerega,Hugh Cross

Publisher: Columbia University Press

ISBN: 9780231508094

Category: Science

Page: 384

View: 9732

Darwin's Harvest addresses concerns that we are losing the diversity of crop plants that provide food for most of the world. With contributions from evolutionary biologists, geneticists, agronomists, molecular biologists, and anthropologists, this collection discusses how economic development, loss of heirloom varieties and wild ancestors, and modern agricultural techniques have endangered the genetic diversity needed to keep agricultural crops vital and capable of adaptation. Drawing on the most up-to-date data, the contributors review the utilization of molecular techniques to understand crop evolution. They explore current research on various crop plants of both temperate and tropical origin, including maize, sunflower, avocado, sugarcane, and wheat. The chapters in Darwin's Harvest also provide solid background for understanding many recent discoveries concerning the origins of crops and the influence of human migration and farming practices on the genetics of our modern foods.

The Singing Neanderthals

The Origins of Music, Language, Mind, and Body

Author: Steven J. Mithen

Publisher: Harvard University Press

ISBN: 9780674021921

Category: Music

Page: 374

View: 6394

The propensity to make music is the most mysterious, wonderful, and neglected feature of humankind: this is where Steven Mithen began, drawing together strands from archaeology, anthropology, psychology, neuroscience--and, of course, musicology--to explain why we are so compelled to make and hear music. But music could not be explained without addressing language, and could not be accounted for without understanding the evolution of the human body and mind. Thus Mithen arrived at the wildly ambitious project that unfolds in this book: an exploration of music as a fundamental aspect of the human condition, encoded into the human genome during the evolutionary history of our species. Music is the language of emotion, common wisdom tells us. In The Singing Neanderthals, Mithen introduces us to the science that might support such popular notions. With equal parts scientific rigor and charm, he marshals current evidence about social organization, tool and weapon technologies, hunting and scavenging strategies, habits and brain capacity of all our hominid ancestors, from australopithecines to Homo erectus, Homo heidelbergensis and Neanderthals to Homo sapiens--and comes up with a scenario for a shared musical and linguistic heritage. Along the way he weaves a tapestry of cognitive and expressive worlds--alive with vocalized sound, communal mimicry, sexual display, and rhythmic movement--of various species. The result is a fascinating work--and a succinct riposte to those, like Steven Pinker, who have dismissed music as a functionless evolutionary byproduct.

The Atlantis Gene

The Origin Mystery, Book 1: a Thriller

Author: A. G. Riddle

Publisher: Lightning Source Incorporated

ISBN: 9781940026046

Category: Fiction

Page: 452

View: 9066

Subtitle from additional title page preceeding page 1.

Bovine Genomics

Author: James Womack

Publisher: John Wiley & Sons

ISBN: 0813821223

Category: Medical

Page: 271

View: 735

The genetic information being unlocked by advances in genomic and high throughput technologies is rapidly revolutionizing our understanding of developmental processes in bovine species. This information is allowing researchers unprecedented insight into the genetic basis of key traits. Bovine Genomics is the first book to bring together and synthesize the information learned through the bovine genome sequencing project and look at its practical application to cattle and dairy production. Bovine Genomics opens with foundational chapters on the domestication of cattle and traditional Mendelian genetics. Building on these chapters, coverage rapidly moves to quantitative genetics and the advances of whole genome technologies. Significant coverage is given to such topics as epigenetics, mapping quantitative trail loci, genome-wide association studies and genomic selection in cattle breeding. The book is a valuable synthesis of the field written by a global team of leading researchers. Providing wide-ranging coverage of the topic, Bovine Genomic, is an essential guide to the field. The basic and applied science will be of use to researchers, breeders, and advanced students.

Ecology and Evolution of Cancer

Author: Beata Ujvari,Benjamin Roche,Frederic Thomas

Publisher: Academic Press

ISBN: 0128043806

Category: Medical

Page: 290

View: 5728

Ecology and Evolution of Cancer is a timely work outlining ideas that not only represent a substantial and original contribution to the fields of evolution, ecology, and cancer, but also goes beyond by connecting the interfaces of these disciplines. This work engages the expertise of a multidisciplinary research team to collate and review the latest knowledge and developments in this exciting research field. The evolutionary perspective of cancer has gained significant international recognition and interest, which is fully understandable given that somatic cellular selection and evolution are elegant explanations for carcinogenesis. Cancer is now generally accepted to be an evolutionary and ecological process with complex interactions between tumor cells and their environment sharing many similarities with organismal evolution. As a critical contribution to this field of research the book is important and relevant for the applications of evolutionary biology to understand the origin of cancers, to control neoplastic progression, and to prevent therapeutic failures. Covers all aspects of the evolution of cancer, appealing to researchers seeking to understand its origins and effects of treatments on its progression, as well as to lecturers in evolutionary medicine Functions as both an introduction to cancer and evolution and a review of the current research on this burgeoning, exciting field, presented by an international group of leading editors and contributors Improves understanding of the origin and the evolution of cancer, aiding efforts to determine how this disease interferes with biotic interactions that govern ecosystems Highlights research that intends to apply evolutionary principles to help predict emergence and metastatic progression with the aim of improving therapies