Numerical Analysis Using R

Solutions to ODEs and PDEs

Author: Graham W. Griffiths

Publisher: Cambridge University Press

ISBN: 131665415X

Category: Mathematics

Page: N.A

View: 1876

This book presents the latest numerical solutions to initial value problems and boundary value problems described by ODEs and PDEs. The author offers practical methods that can be adapted to solve wide ranges of problems and illustrates them in the increasingly popular open source computer language R, allowing integration with more statistically based methods. The book begins with standard techniques, followed by an overview of 'high resolution' flux limiters and WENO to solve problems with solutions exhibiting high gradient phenomena. Meshless methods using radial basis functions are then discussed in the context of scattered data interpolation and the solution of PDEs on irregular grids. Three detailed case studies demonstrate how numerical methods can be used to tackle very different complex problems. With its focus on practical solutions to real-world problems, this book will be useful to students and practitioners in all areas of science and engineering, especially those using R.

Using R for Numerical Analysis in Science and Engineering

Author: Victor A. Bloomfield

Publisher: CRC Press

ISBN: 1315360497

Category: Mathematics

Page: 359

View: 1442

Instead of presenting the standard theoretical treatments that underlie the various numerical methods used by scientists and engineers, Using R for Numerical Analysis in Science and Engineering shows how to use R and its add-on packages to obtain numerical solutions to the complex mathematical problems commonly faced by scientists and engineers. This practical guide to the capabilities of R demonstrates Monte Carlo, stochastic, deterministic, and other numerical methods through an abundance of worked examples and code, covering the solution of systems of linear algebraic equations and nonlinear equations as well as ordinary differential equations and partial differential equations. It not only shows how to use R’s powerful graphic tools to construct the types of plots most useful in scientific and engineering work, but also: Explains how to statistically analyze and fit data to linear and nonlinear models Explores numerical differentiation, integration, and optimization Describes how to find eigenvalues and eigenfunctions Discusses interpolation and curve fitting Considers the analysis of time series Using R for Numerical Analysis in Science and Engineering provides a solid introduction to the most useful numerical methods for scientific and engineering data analysis using R.

Solving Differential Equations in R

Author: Karline Soetaert,Jeff Cash,Francesca Mazzia

Publisher: Springer Science & Business Media

ISBN: 3642280706

Category: Computers

Page: 248

View: 9894

Mathematics plays an important role in many scientific and engineering disciplines. This book deals with the numerical solution of differential equations, a very important branch of mathematics. Our aim is to give a practical and theoretical account of how to solve a large variety of differential equations, comprising ordinary differential equations, initial value problems and boundary value problems, differential algebraic equations, partial differential equations and delay differential equations. The solution of differential equations using R is the main focus of this book. It is therefore intended for the practitioner, the student and the scientist, who wants to know how to use R for solving differential equations. However, it has been our goal that non-mathematicians should at least understand the basics of the methods, while obtaining entrance into the relevant literature that provides more mathematical background. Therefore, each chapter that deals with R examples is preceded by a chapter where the theory behind the numerical methods being used is introduced. In the sections that deal with the use of R for solving differential equations, we have taken examples from a variety of disciplines, including biology, chemistry, physics, pharmacokinetics. Many examples are well-known test examples, used frequently in the field of numerical analysis.

Spline Collocation Methods for Partial Differential Equations

With Applications in R

Author: William E. Schiesser

Publisher: John Wiley & Sons

ISBN: 1119301033


Page: 576

View: 9623

One-dimensional PDEs -- Multidimensional PDEs -- Navier-Stokes, Burgers equations -- Korteweg-deVries equation -- Maxwell equations -- Poisson-Nernst-Planck equations -- Fokker-Planck equation -- Fisher-Kolmogorov equation -- Klein-Gordon equation -- Boussinesq equation -- Cahn-Hilliard equation -- Camassa-Holm equation -- Burgers-Huxley equation -- Gierer-Meinhardt equations -- Keller-Segel equations -- Fitzhugh-Nagumo equations -- Euler-Poisson-Darboux equation -- Kuramoto-Sivashinsky equation -- Einstein-Maxwell equations

Numerical Methods for Differential Equations

A Computational Approach

Author: J.R. Dormand

Publisher: CRC Press

ISBN: 9780849394331

Category: Mathematics

Page: 384

View: 4713

With emphasis on modern techniques, Numerical Methods for Differential Equations: A Computational Approach covers the development and application of methods for the numerical solution of ordinary differential equations. Some of the methods are extended to cover partial differential equations. All techniques covered in the text are on a program disk included with the book, and are written in Fortran 90. These programs are ideal for students, researchers, and practitioners because they allow for straightforward application of the numerical methods described in the text. The code is easily modified to solve new systems of equations. Numerical Methods for Differential Equations: A Computational Approach also contains a reliable and inexpensive global error code for those interested in global error estimation. This is a valuable text for students, who will find the derivations of the numerical methods extremely helpful and the programs themselves easy to use. It is also an excellent reference and source of software for researchers and practitioners who need computer solutions to differential equations.

Traveling Wave Analysis of Partial Differential Equations

Numerical and Analytical Methods with Matlab and Maple

Author: Graham Griffiths,William E. Schiesser

Publisher: Academic Press

ISBN: 9780123846532

Category: Mathematics

Page: 461

View: 7878

Although the Partial Differential Equations (PDE) models that are now studied are usually beyond traditional mathematical analysis, the numerical methods that are being developed and used require testing and validation. This is often done with PDEs that have known, exact, analytical solutions. The development of analytical solutions is also an active area of research, with many advances being reported recently, particularly traveling wave solutions for nonlinear evolutionary PDEs. Thus, the current development of analytical solutions directly supports the development of numerical methods by providing a spectrum of test problems that can be used to evaluate numerical methods. This book surveys some of these new developments in analytical and numerical methods, and relates the two through a series of PDE examples. The PDEs that have been selected are largely "named'' since they carry the names of their original contributors. These names usually signify that the PDEs are widely recognized and used in many application areas. The authors’ intention is to provide a set of numerical and analytical methods based on the concept of a traveling wave, with a central feature of conversion of the PDEs to ODEs. The Matlab and Maple software will be available for download from this website shortly. Includes a spectrum of applications in science, engineering, applied mathematics Presents a combination of numerical and analytical methods Provides transportable computer codes in Matlab and Maple

Method of Lines PDE Analysis in Biomedical Science and Engineering

Author: William E. Schiesser

Publisher: John Wiley & Sons

ISBN: 1119130506

Category: Mathematics

Page: 370

View: 4628

Presents the methodology and applications of ODE and PDE models within biomedical science and engineering With an emphasis on the method of lines (MOL) for partial differential equation (PDE) numerical integration, Method of Lines PDE Analysis in Biomedical Science and Engineering demonstrates the use of numerical methods for the computer solution of PDEs as applied to biomedical science and engineering (BMSE). Written by a well-known researcher in the field, the book provides an introduction to basic numerical methods for initial/boundary value PDEs before moving on to specific BMSE applications of PDEs. Featuring a straightforward approach, the book’s chapters follow a consistent and comprehensive format. First, each chapter begins by presenting the model as an ordinary differential equation (ODE)/PDE system, including the initial and boundary conditions. Next, the programming of the model equations is introduced through a series of R routines that primarily implement MOL for PDEs. Subsequently, the resulting numerical and graphical solution is discussed and interpreted with respect to the model equations. Finally, each chapter concludes with a review of the numerical algorithm performance, general observations and results, and possible extensions of the model. Method of Lines PDE Analysis in Biomedical Science and Engineering also includes: Examples of MOL analysis of PDEs, including BMSE applications in wave front resolution in chromatography, VEGF angiogenesis, thermographic tumor location, blood-tissue transport, two fluid and membrane mass transfer, artificial liver support system, cross diffusion epidemiology, oncolytic virotherapy, tumor cell density in glioblastomas, and variable grids Discussions on the use of R software, which facilitates immediate solutions to differential equation problems without having to first learn the basic concepts of numerical analysis for PDEs and the programming of PDE algorithms A companion website that provides source code for the R routines Method of Lines PDE Analysis in Biomedical Science and Engineering is an introductory reference for researchers, scientists, clinicians, medical researchers, mathematicians, statisticians, chemical engineers, epidemiologists, and pharmacokineticists as well as anyone interested in clinical applications and the interpretation of experimental data with differential equation models. The book is also an ideal textbook for graduate-level courses in applied mathematics, BMSE, biology, biophysics, biochemistry, medicine, and engineering.

The Numerical Method of Lines

Integration of Partial Differential Equations

Author: William E. Schiesser

Publisher: Elsevier

ISBN: 0128015519

Category: Mathematics

Page: 326

View: 2720

This is the first book on the numerical method of lines, a relatively new method for solving partial differential equations. The Numerical Method of Lines is also the first book to accommodate all major classes of partial differential equations. This is essentially an applications book for computer scientists. The author will separately offer a disk of FORTRAN 77 programs with 250 specific applications, ranging from "Shuttle Launch Simulation" to "Temperature Control of a Nuclear Fuel Rod."

Numerical Integration of Space Fractional Partial Differential Equations

Vol 1 - Introduction to Algorithms and Computer Coding in R

Author: Younes Salehi,William E. Schiesser

Publisher: Morgan & Claypool Publishers

ISBN: 1681732084

Category: Mathematics

Page: 201

View: 7926

Partial differential equations (PDEs) are one of the most used widely forms of mathematics in science and engineering. PDEs can have partial derivatives with respect to (1) an initial value variable, typically time, and (2) boundary value variables, typically spatial variables. Therefore, two fractional PDEs can be considered, (1) fractional in time (TFPDEs), and (2) fractional in space (SFPDEs). The two volumes are directed to the development and use of SFPDEs, with the discussion divided as: Vol 1: Introduction to Algorithms and Computer Coding in R Vol 2: Applications from Classical Integer PDEs. Various definitions of space fractional derivatives have been proposed. We focus on the Caputo derivative, with occasional reference to the Riemann-Liouville derivative. Partial differential equations (PDEs) are one of the most used widely forms of mathematics in science and engineering. PDEs can have partial derivatives with respect to (1) an initial value variable, typically time, and (2) boundary value variables, typically spatial variables. Therefore, two fractional PDEs can be considered, (1) fractional in time (TFPDEs), and (2) fractional in space (SFPDEs). The two volumes are directed to the development and use of SFPDEs, with the discussion divided as: Vol 1: Introduction to Algorithms and Computer Coding in R Vol 2: Applications from Classical Integer PDEs. Various definitions of space fractional derivatives have been proposed. We focus on the Caputo derivative, with occasional reference to the Riemann-Liouville derivative. The Caputo derivative is defined as a convolution integral. Thus, rather than being local (with a value at a particular point in space), the Caputo derivative is non-local (it is based on an integration in space), which is one of the reasons that it has properties not shared by integer derivatives. A principal objective of the two volumes is to provide the reader with a set of documented R routines that are discussed in detail, and can be downloaded and executed without having to first study the details of the relevant numerical analysis and then code a set of routines. In the first volume, the emphasis is on basic concepts of SFPDEs and the associated numerical algorithms. The presentation is not as formal mathematics, e.g., theorems and proofs. Rather, the presentation is by examples of SFPDEs, including a detailed discussion of the algorithms for computing numerical solutions to SFPDEs and a detailed explanation of the associated source code.

Differential Equation Analysis in Biomedical Science and Engineering

Partial Differential Equation Applications with R

Author: William E. Schiesser

Publisher: John Wiley & Sons

ISBN: 1118705165

Category: Mathematics

Page: 344

View: 5213

Features a solid foundation of mathematical and computationaltools to formulate and solve real-world PDE problems across variousfields With a step-by-step approach to solving partial differentialequations (PDEs), Differential Equation Analysis in BiomedicalScience and Engineering: Partial Differential Equation Applicationswith R successfully applies computational techniques forsolving real-world PDE problems that are found in a variety offields, including chemistry, physics, biology, and physiology. Thebook provides readers with the necessary knowledge to reproduce andextend the computed numerical solutions and is a valuable resourcefor dealing with a broad class of linear and nonlinear partialdifferential equations. The author’s primary focus is on models expressed assystems of PDEs, which generally result from including spatialeffects so that the PDE dependent variables are functions of bothspace and time, unlike ordinary differential equation (ODE) systemsthat pertain to time only. As such, the book emphasizes details ofthe numerical algorithms and how the solutions were computed.Featuring computer-based mathematical models for solving real-worldproblems in the biological and biomedical sciences and engineering,the book also includes: R routines to facilitate the immediate use of computation forsolving differential equation problems without having to firstlearn the basic concepts of numerical analysis and programming forPDEs Models as systems of PDEs and associated initial and boundaryconditions with explanations of the associated chemistry, physics,biology, and physiology Numerical solutions of the presented model equations with adiscussion of the important features of the solutions Aspects of general PDE computation through various biomedicalscience and engineering applications Differential Equation Analysis in Biomedical Science andEngineering: Partial Differential Equation Applications with Ris an excellent reference for researchers, scientists, clinicians,medical researchers, engineers, statisticians, epidemiologists, andpharmacokineticists who are interested in both clinicalapplications and interpretation of experimental data withmathematical models in order to efficiently solve the associateddifferential equations. The book is also useful as a textbook forgraduate-level courses in mathematics, biomedical science andengineering, biology, biophysics, biochemistry, medicine, andengineering.

Fractional Partial Differential Equations and Their Numerical Solutions

Author: Boling Guo,Xueke Pu,Fenghui Huang

Publisher: World Scientific

ISBN: 9814667064

Category: Mathematics

Page: 348

View: 3593

This book aims to introduce some new trends and results on the study of the fractional differential equations, and to provide a good understanding of this field to beginners who are interested in this field, which is the authors' beautiful hope. This book describes theoretical and numerical aspects of the fractional partial differential equations, including the authors' researches in this field, such as the fractional Nonlinear Schrödinger equations, fractional Landau–Lifshitz equations and fractional Ginzburg–Landau equations. It also covers enough fundamental knowledge on the fractional derivatives and fractional integrals, and enough background of the fractional PDEs. Contents:Physics BackgroundFractional Calculus and Fractional Differential EquationsFractional Partial Differential EquationsNumerical Approximations in Fractional CalculusNumerical Methods for the Fractional Ordinary Differential EquationsNumerical Methods for Fractional Partial Differential Equations Readership: Graduate students and researchers in mathematical physics, numerical analysis and computational mathematics. Key Features:This book covers the fundamentals of this field, especially for the beginnersThe book covers new trends and results in this fieldThe book covers numerical results, which will be of broad interests to researchersKeywords:Fractional Partial Differential Equations;Numerical Solutions

Numerical Methods for Fluid Dynamics

With Applications to Geophysics

Author: Dale R. Durran

Publisher: Springer Science & Business Media

ISBN: 9781441964120

Category: Mathematics

Page: 516

View: 6620

This scholarly text provides an introduction to the numerical methods used to model partial differential equations, with focus on atmospheric and oceanic flows. The book covers both the essentials of building a numerical model and the more sophisticated techniques that are now available. Finite difference methods, spectral methods, finite element method, flux-corrected methods and TVC schemes are all discussed. Throughout, the author keeps to a middle ground between the theorem-proof formalism of a mathematical text and the highly empirical approach found in some engineering publications. The book establishes a concrete link between theory and practice using an extensive range of test problems to illustrate the theoretically derived properties of various methods. From the reviews: "...the books unquestionable advantage is the clarity and simplicity in presenting virtually all basic ideas and methods of numerical analysis currently actively used in geophysical fluid dynamics." Physics of Atmosphere and Ocean

Computational Methods in Chemical Engineering with Maple

Author: Ralph E. White,Venkat R. Subramanian

Publisher: Springer Science & Business Media

ISBN: 9783642043116

Category: Science

Page: 860

View: 7219

This book presents Maple solutions to a wide range of problems relevant to chemical engineers and others. Many of these solutions use Maple’s symbolic capability to help bridge the gap between analytical and numerical solutions. The readers are strongly encouraged to refer to the references included in the book for a better understanding of the physics involved, and for the mathematical analysis. This book was written for a senior undergraduate or a first year graduate student course in chemical engineering. Most of the examples in this book were done in Maple 10. However, the codes should run in the most recent version of Maple. We strongly encourage the readers to use the classic worksheet (*. mws) option in Maple as we believe it is more user-friendly and robust. In chapter one you will find an introduction to Maple which includes simple basics as a convenience for the reader such as plotting, solving linear and nonlinear equations, Laplace transformations, matrix operations, ‘do loop,’ and ‘while loop. ’ Chapter two presents linear ordinary differential equations in section 1 to include homogeneous and nonhomogeneous ODEs, solving systems of ODEs using the matrix exponential and Laplace transform method. In section two of chapter two, nonlinear ordinary differential equations are presented and include simultaneous series reactions, solving nonlinear ODEs with Maple’s ‘dsolve’ command, stop conditions, differential algebraic equations, and steady state solutions. Chapter three addresses boundary value problems.

Mathematical Physics with Partial Differential Equations

Author: James R. Kirkwood

Publisher: Academic Press

ISBN: 0123869110

Category: Mathematics

Page: 418

View: 4147

Suitable for advanced undergraduate and beginning graduate students taking a course on mathematical physics, this title presents some of the most important topics and methods of mathematical physics. It contains mathematical derivations and solutions - reinforcing the material through repetition of both the equations and the techniques.

Methods in Neuronal Modeling

From Ions to Networks

Author: Christof Koch,Idan Segev

Publisher: MIT Press

ISBN: 9780262112314

Category: Medical

Page: 671

View: 8273

This book serves as a handbook of computational methods and techniques for modeling the functional properties of single and groups of nerve cells.

Differential Equation Analysis in Biomedical Science and Engineering

Ordinary Differential Equation Applications with R

Author: William E. Schiesser

Publisher: John Wiley & Sons

ISBN: 1118705483


Page: 440

View: 3285

"This book focuses on the rapidly expanding development and use of computer-based mathematical models in the life sciences, designated here as biomedical science and engineering (BMSE). ... The intent of this book is to fill in the steps for selected example applications that will give the reader the knowledge to reproduce and possibly extend the numerical solutions with reasonable effort. Specifically, the numerical algorithms are discussed in some detail, with additional background references, so that the reader will have some understanding of how the calculations were performed, and a set of transportable routines in R1 is provided so that the reader can execute to produce and extend the solutions. ... In summary, my intention is to provide a set of basic computational procedures for ODE/PDE models in the two volumes that readers can use without becoming deeply involved in the details of the numerical methods for ODE/PDEs and computer programs."--Preface, p. ix-x, xiii.

Numerical Methods in Software and Analysis

Author: John R. Rice

Publisher: Elsevier

ISBN: 1483295680

Category: Mathematics

Page: 720

View: 424

Numerical Methods, Software, and Analysis, Second Edition introduces science and engineering students to the methods, tools, and ideas of numerical computation. Introductory courses in numerical methods face a fundamental problem-there is too little time to learn too much. This text solves that problem by using high-quality mathematical software. In fact, the objective of the text is to present scientific problem solving using standard mathematical software. This book discusses numerous programs and software packages focusing on the IMSL library (including the PROTRAN system) and ACM Algorithms. The book is organized into three parts. Part I presents the background material. Part II presents the principal methods and ideas of numerical computation. Part III contains material about software engineering and performance evaluation. A uniform approach is used in each area of numerical computation. First, an intuitive development is made of the problems and the basic methods for their solution. Then, relevant mathematical software is reviewed and its use outlined. Many areas provide extensive examples and case studies. Finally, a deeper analysis of the methods is presented as in traditional numerical analysis texts. Emphasizes the use of high-quality mathematical software for numerical computation Extensive use of IMSL routines Features extensive examples and case studies

Computational Multiscale Modeling of Fluids and Solids

Theory and Applications

Author: Martin Oliver Steinhauser

Publisher: Springer Science & Business Media

ISBN: 3540751165

Category: Science

Page: 427

View: 9354

The idea of the book is to provide a comprehensive overview of computational physics methods and techniques, that are used for materials modeling on different length and time scales. Each chapter first provides an overview of the physical basic principles which are the basis for the numerical and mathematical modeling on the respective length-scale. The book includes the micro-scale, the meso-scale and the macro-scale. The chapters follow this classification. The book will explain in detail many tricks of the trade of some of the most important methods and techniques that are used to simulate materials on the perspective levels of spatial and temporal resolution. Case studies are occasionally included to further illustrate some methods or theoretical considerations. Example applications for all techniques are provided, some of which are from the author’s own contributions to some of the research areas. Methods are explained, if possible, on the basis of the original publications but also references to standard text books established in the various fields are mentioned.