Applied Spatial Data Analysis with R, second edition, is divided into two basic parts, the first presenting R packages, functions, classes and methods for handling spatial data. This part is of interest to users who need to access and visualise spatial data. Data import and export for many file formats for spatial data are covered in detail, as is the interface between R and the open source GRASS GIS and the handling of spatio-temporal data. The second part showcases more specialised kinds of spatial data analysis, including spatial point pattern analysis, interpolation and geostatistics, areal data analysis and disease mapping. The coverage of methods of spatial data analysis ranges from standard techniques to new developments, and the examples used are largely taken from the spatial statistics literature. All the examples can be run using R contributed packages available from the CRAN website, with code and additional data sets from the book's own website. Compared to the first edition, the second edition covers the more systematic approach towards handling spatial data in R, as well as a number of important and widely used CRAN packages that have appeared since the first edition. This book will be of interest to researchers who intend to use R to handle, visualise, and analyse spatial data. It will also be of interest to spatial data analysts who do not use R, but who are interested in practical aspects of implementing software for spatial data analysis. It is a suitable companion book for introductory spatial statistics courses and for applied methods courses in a wide range of subjects using spatial data, including human and physical geography, geographical information science and geoinformatics, the environmental sciences, ecology, public health and disease control, economics, public administration and political science. The book has a website where complete code examples, data sets, and other support material may be found: http://www.asdar-book.org. The authors have taken part in writing and maintaining software for spatial data handling and analysis with R in concert since 2003.
There has been dramatic growth in the development and application of Bayesian inference in statistics. Berger (2000) documents the increase in Bayesian activity by the number of published research articles, the number of books,andtheextensivenumberofapplicationsofBayesianarticlesinapplied disciplines such as science and engineering. One reason for the dramatic growth in Bayesian modeling is the availab- ity of computational algorithms to compute the range of integrals that are necessary in a Bayesian posterior analysis. Due to the speed of modern c- puters, it is now possible to use the Bayesian paradigm to ?t very complex models that cannot be ?t by alternative frequentist methods. To ?t Bayesian models, one needs a statistical computing environment. This environment should be such that one can: write short scripts to de?ne a Bayesian model use or write functions to summarize a posterior distribution use functions to simulate from the posterior distribution construct graphs to illustrate the posterior inference An environment that meets these requirements is the R system. R provides a wide range of functions for data manipulation, calculation, and graphical d- plays. Moreover, it includes a well-developed, simple programming language that users can extend by adding new functions. Many such extensions of the language in the form of packages are easily downloadable from the Comp- hensive R Archive Network (CRAN).
Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical Ecology and the implementation of this discipline in the R language. After short theoretical overviews, the authors accompany the users through the exploration of the methods by means of applied and extensively commented examples. Users are invited to use this book as a teaching companion at the computer. The travel starts with exploratory approaches, proceeds with the construction of association matrices, then addresses three families of methods: clustering, unconstrained and canonical ordination, and spatial analysis. All the necessary data files, the scripts used in the chapters, as well as the extra R functions and packages written by the authors, can be downloaded from a web page accessible through the Springer web site(http://adn.biol.umontreal.ca/~numericalecology/numecolR/). This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. The three authors teach numerical ecology, both theoretical and practical, to a wide array of audiences, in regular courses in their Universities and in short courses given around the world. Daniel Borcard is lecturer of Biostatistics and Ecology and researcher in Numerical Ecology at Université de Montréal, Québec, Canada. François Gillet is professor of Community Ecology and Ecological Modelling at Université de Franche-Comté, Besançon, France. Pierre Legendre is professor of Quantitative Biology and Ecology at Université de Montréal, Fellow of the Royal Society of Canada, and ISI Highly Cited Researcher in Ecology/Environment.
A hands on guide to web scraping and text mining for bothbeginners and experienced users of R Introduces fundamental concepts of the main architecture of theweb and databases and covers HTTP, HTML, XML, JSON, SQL. Provides basic techniques to query web documents and data sets(XPath and regular expressions). An extensive set of exercises are presented to guide thereader through each technique. Explores both supervised and unsupervised techniques as well asadvanced techniques such as data scraping and text management. Case studies are featured throughout along with examples foreach technique presented. R code and solutions to exercises featured in thebook are provided on a supporting website.
The Handbook is written for academics, researchers, practitioners and advanced graduate students. It has been designed to be read by those new or starting out in the field of spatial analysis as well as by those who are already familiar with the field. The chapters have been written in such a way that readers who are new to the field will gain important overview and insight. At the same time, those readers who are already practitioners in the field will gain through the advanced and/or updated tools and new materials and state-of-the-art developments included. This volume provides an accounting of the diversity of current and emergent approaches, not available elsewhere despite the many excellent journals and te- books that exist. Most of the chapters are original, some few are reprints from the Journal of Geographical Systems, Geographical Analysis, The Review of Regional Studies and Letters of Spatial and Resource Sciences. We let our contributors - velop, from their particular perspective and insights, their own strategies for m- ping the part of terrain for which they were responsible. As the chapters were submitted, we became the first consumers of the project we had initiated. We gained from depth, breadth and distinctiveness of our contributors’ insights and, in particular, the presence of links between them.
Applied Survival Analysis Using R covers the main principles of survival analysis, gives examples of how it is applied, and teaches how to put those principles to use to analyze data using R as a vehicle. Survival data, where the primary outcome is time to a specific event, arise in many areas of biomedical research, including clinical trials, epidemiological studies, and studies of animals. Many survival methods are extensions of techniques used in linear regression and categorical data, while other aspects of this field are unique to survival data. This text employs numerous actual examples to illustrate survival curve estimation, comparison of survivals of different groups, proper accounting for censoring and truncation, model variable selection, and residual analysis. Because explaining survival analysis requires more advanced mathematics than many other statistical topics, this book is organized with basic concepts and most frequently used procedures covered in earlier chapters, with more advanced topics near the end and in the appendices. A background in basic linear regression and categorical data analysis, as well as a basic knowledge of calculus and the R system, will help the reader to fully appreciate the information presented. Examples are simple and straightforward while still illustrating key points, shedding light on the application of survival analysis in a way that is useful for graduate students, researchers, and practitioners in biostatistics.
A beginner’s guide to manipulating, managing, and analyzing spatial data using R and QGIS 3.2.2
Author: Shammunul Islam
Publisher: Packt Publishing Ltd
Practical examples with real-world projects in GIS, Remote sensing, Geospatial data management and Analysis using the R programming language Key Features Understand the basics of R and QGIS to work with GIS and remote sensing data Learn to manage, manipulate, and analyze spatial data using R and QGIS Apply machine learning algorithms to geospatial data using R and QGIS Book Description Managing spatial data has always been challenging and it's getting more complex as the size of data increases. Spatial data is actually big data and you need different tools and techniques to work your way around to model and create different workflows. R and QGIS have powerful features that can make this job easier. This book is your companion for applying machine learning algorithms on GIS and remote sensing data. You’ll start by gaining an understanding of the nature of spatial data and installing R and QGIS. Then, you’ll learn how to use different R packages to import, export, and visualize data, before doing the same in QGIS. Screenshots are included to ease your understanding. Moving on, you’ll learn about different aspects of managing and analyzing spatial data, before diving into advanced topics. You’ll create powerful data visualizations using ggplot2, ggmap, raster, and other packages of R. You’ll learn how to use QGIS 3.2.2 to visualize and manage (create, edit, and format) spatial data. Different types of spatial analysis are also covered using R. Finally, you’ll work with landslide data from Bangladesh to create a landslide susceptibility map using different machine learning algorithms. By reading this book, you’ll transition from being a beginner to an intermediate user of GIS and remote sensing data in no time. What you will learn Install R and QGIS Get familiar with the basics of R programming and QGIS Visualize quantitative and qualitative data to create maps Find out the basics of raster data and how to use them in R and QGIS Perform geoprocessing tasks and automate them using the graphical modeler of QGIS Apply different machine learning algorithms on satellite data for landslide susceptibility mapping and prediction Who this book is for This book is great for geographers, environmental scientists, statisticians, and every professional who deals with spatial data. If you want to learn how to handle GIS and remote sensing data, then this book is for you. Basic knowledge of R and QGIS would be helpful but is not necessary.
This is a new edition of the accessible and student-friendly 'how to' for anyone using R for the first time, for use in spatial statistical analysis, geocomputation and digital mapping. The authors, once again, take readers from ‘zero to hero’, updating the now standard text to further enable practical R applications in GIS, spatial analyses, spatial statistics, web-scraping and more. Revised and updated, each chapter includes: example data and commands to explore hands-on; scripts and coding to exemplify specific functionality; self-contained exercises for students to work through; embedded code within the descriptive text. The new edition includes detailed discussion of new and emerging packages within R like sf, ggplot, tmap, making it the go to introduction for all researchers collecting and using data with location attached. This is the introduction to the use of R for spatial statistical analysis, geocomputation, and GIS for all researchers - regardless of discipline - collecting and using data with location attached.
Assuming no prior knowledge of R, Spatial Data Analysis in Ecology and Agriculture Using R provides practical instruction on the use of the R programming language to analyze spatial data arising from research in ecology and agriculture. Written in terms of four data sets easily accessible online, this book guides the reader through the analysis of each data set, including setting research objectives, designing the sampling plan, data quality control, exploratory and confirmatory data analysis, and drawing scientific conclusions. Based on the author’s spatial data analysis course at the University of California, Davis, the book is intended for classroom use or self-study by graduate students and researchers in ecology, geography, and agricultural science with an interest in the analysis of spatial data.